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LOC100824234 putative glucose-6-phosphate 1-epimerase [ Brachypodium distachyon (stiff brome) ]

Gene ID: 100824234, updated on 9-Nov-2023

Summary

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Gene symbol
LOC100824234
Gene description
putative glucose-6-phosphate 1-epimerase
Locus tag
BRADI_4g28160v3
Gene type
protein coding
RefSeq status
MODEL
Organism
Brachypodium distachyon
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Stipodae; Brachypodieae; Brachypodium
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Genomic context

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See LOC100824234 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
10
Annotation release Status Assembly Chr Location
103 current Brachypodium_distachyon_v3.0 (GCF_000005505.3) 4 NC_016134.3 (33380695..33384038, complement)
102 previous assembly Brachypodium_distachyon_v2.0 (GCF_000005505.2) 4 NC_016134.2 (33562662..33566002, complement)

Chromosome 4 - NC_016134.3Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At4g02750 Neighboring gene bifunctional protein FolD 1, mitochondrial Neighboring gene CASP-like protein 4U1 Neighboring gene uncharacterized LOC100824540

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Resolution of deep angiosperm phylogeny using conserved nuclear genes and estimates of early divergence times. Zeng L, et al. Nat Commun, 2014 Sep 24. PMID 25249442, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables isomerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
putative glucose-6-phosphate 1-epimerase
Names
galactose mutarotase-like superfamily protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brachypodium distachyon Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Brachypodium_distachyon_v3.0 Primary Assembly

Genomic

  1. NC_016134.3 Reference Brachypodium_distachyon_v3.0 Primary Assembly

    Range
    33380695..33384038 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003577946.4 → XP_003577994.1  putative glucose-6-phosphate 1-epimerase

    UniProtKB/TrEMBL
    A0A2K2CQY1
    Conserved Domains (1) summary
    cd09020
    Location:57 → 314
    D-hex-6-P-epi_like; D-hexose-6-phosphate epimerase-like
Nucleotide Protein Strain
Heading Accession and Version

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