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LOC100818029 UTP:RNA uridylyltransferase 1 [ Glycine max (soybean) ]

Gene ID: 100818029, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100818029
Gene description
UTP:RNA uridylyltransferase 1
Locus tag
GLYMA_03G020100v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100818029 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
6
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 3 NC_016090.4 (2031916..2037098, complement)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 3 NC_016090.3 (2057795..2063029, complement)

Chromosome 3 - NC_016090.4Genomic Context describing neighboring genes Neighboring gene gibberellin 20 oxidase 1 Neighboring gene glyoxylate/hydroxypyruvate reductase HPR3-like Neighboring gene F-box protein At5g49610 Neighboring gene cytochrome P450 704C1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA uridylyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA 3' uridylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
UTP:RNA uridylyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_016090.4 Reference Glycine_max_v4.0 Primary Assembly

    Range
    2031916..2037098 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003521890.5 → XP_003521938.1  UTP:RNA uridylyltransferase 1

    UniProtKB/TrEMBL
    I1JKI3
    Conserved Domains (3) summary
    cd05402
    Location:431 → 541
    NT_PAP_TUTase; Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases
    COG5260
    Location:371 → 716
    TRF4; DNA polymerase sigma [Replication, recombination and repair]
    pfam03828
    Location:630 → 689
    PAP_assoc; Cid1 family poly A polymerase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases