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LOC100817411 potassium transporter 6 [ Glycine max (soybean) ]

Gene ID: 100817411, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100817411
Gene description
potassium transporter 6
Locus tag
GLYMA_08G288500v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100817411 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
8
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 8 NC_038244.2 (39495700..39502619)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 8 NC_038244.1 (40077719..40084553)

Chromosome 8 - NC_038244.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121175333 Neighboring gene CBL-interacting serine/threonine-protein kinase 12-like Neighboring gene uncharacterized LOC121175334 Neighboring gene probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 10

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables potassium ion transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in potassium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
potassium transporter 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038244.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    39495700..39502619
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006585893.4 → XP_006585956.1  potassium transporter 6 isoform X1

    UniProtKB/TrEMBL
    A0A0R0FBM5, K7L9J8
    Conserved Domains (1) summary
    cl15781
    Location:1 → 784
    K_trans; K+ potassium transporter

  2. XM_026129750.2 → XP_025985535.1  potassium transporter 6 isoform X2

    UniProtKB/TrEMBL
    A0A0R0FBM5
    Conserved Domains (1) summary
    cl15781
    Location:1 → 763
    K_trans; K+ potassium transporter
Nucleotide Protein
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