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LOC100817178 RINT1-like protein MAG2 [ Glycine max (soybean) ]

Gene ID: 100817178, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100817178
Gene description
RINT1-like protein MAG2
Locus tag
GLYMA_18G175500v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100817178 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
4
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 18 NC_038254.2 (42024188..42028413, complement)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 18 NC_038254.1 (41733495..41737785, complement)

Chromosome 18 - NC_038254.2Genomic Context describing neighboring genes Neighboring gene probable pectate lyase 8 Neighboring gene protein RALF-like 33 Neighboring gene uncharacterized LOC102660711 Neighboring gene putative kinase-like protein TMKL1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of ER to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Dsl1/NZR complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RINT1-like protein MAG2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038254.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    42024188..42028413 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003523997.5 → XP_003524045.1  RINT1-like protein MAG2

    UniProtKB/TrEMBL
    I1JWE9
    Conserved Domains (1) summary
    pfam04437
    Location:293 → 792
    RINT1_TIP1; RINT-1 / TIP-1 family
Nucleotide Protein
Heading Accession and Version

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