U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC100817020 probable phospholipid-transporting ATPase 8 [ Glycine max (soybean) ]

Gene ID: 100817020, updated on 7-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC100817020
Gene description
probable phospholipid-transporting ATPase 8
Locus tag
GLYMA_05G006800v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC100817020 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
11
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 5 NC_038241.2 (646414..656877)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 5 NC_038241.1 (643498..653987)

Chromosome 5 - NC_038241.2Genomic Context describing neighboring genes Neighboring gene cinnamoyl-CoA reductase-like SNL6 Neighboring gene serine/threonine-protein kinase BLUS1 Neighboring gene putative disease resistance RPP13-like protein 1 Neighboring gene uncharacterized LOC102667078

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATPase-coupled intramembrane lipid transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables magnesium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in phospholipid translocation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
probable phospholipid-transporting ATPase 8

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038241.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    646414..656877
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041015837.1 → XP_040871771.1  probable phospholipid-transporting ATPase 8 isoform X2

    UniProtKB/TrEMBL
    A0A0R0EHJ7
    Conserved Domains (1) summary
    TIGR01652
    Location:55 → 1082
    ATPase-Plipid; phospholipid-translocating P-type ATPase, flippase

  2. XM_003525618.5 → XP_003525666.1  probable phospholipid-transporting ATPase 8 isoform X1

    UniProtKB/TrEMBL
    A0A0R0EHJ7, I1K1G8
    Conserved Domains (1) summary
    TIGR01652
    Location:55 → 1159
    ATPase-Plipid; phospholipid-translocating P-type ATPase, flippase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases