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LOC100813882 serine/arginine-rich splicing factor RSZ21 [ Glycine max (soybean) ]

Gene ID: 100813882, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100813882
Gene description
serine/arginine-rich splicing factor RSZ21
Locus tag
GLYMA_08G288300v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100813882 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
7
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 8 NC_038244.2 (39462494..39466206, complement)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 8 NC_038244.1 (40044739..40048193, complement)

Chromosome 8 - NC_038244.2Genomic Context describing neighboring genes Neighboring gene probable LL-diaminopimelate aminotransferase, chloroplastic Neighboring gene spermidine synthase 1 Neighboring gene putative potassium transporter 12 Neighboring gene uncharacterized LOC121175333

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nuclear speck IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
serine/arginine-rich splicing factor RSZ21

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038244.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    39462494..39466206 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003531966.5 → XP_003532014.1  serine/arginine-rich splicing factor RSZ21 isoform X2

    See identical proteins and their annotated locations for XP_003532014.1

    UniProtKB/TrEMBL
    C6TFV9, I1KXH4
    Conserved Domains (2) summary
    pfam00098
    Location:88 → 102
    zf-CCHC; Zinc knuckle
    cd12373
    Location:3 → 71
    RRM_SRSF3_like; RNA recognition motif (RRM) found in serine/arginine-rich splicing factor 3 (SRSF3) and similar proteins

  2. XM_014779320.3 → XP_014634806.1  serine/arginine-rich splicing factor RSZ21 isoform X1

    UniProtKB/TrEMBL
    C6TFV9, I1KXH3
    Conserved Domains (2) summary
    pfam00098
    Location:88 → 102
    zf-CCHC; Zinc knuckle
    cd12373
    Location:3 → 71
    RRM_SRSF3_like; RNA recognition motif (RRM) found in serine/arginine-rich splicing factor 3 (SRSF3) and similar proteins

  3. XM_014779321.3 → XP_014634807.1  serine/arginine-rich splicing factor RSZ21 isoform X1

    UniProtKB/TrEMBL
    C6TFV9, I1KXH3
    Conserved Domains (2) summary
    pfam00098
    Location:88 → 102
    zf-CCHC; Zinc knuckle
    cd12373
    Location:3 → 71
    RRM_SRSF3_like; RNA recognition motif (RRM) found in serine/arginine-rich splicing factor 3 (SRSF3) and similar proteins

  4. XM_041018504.1 → XP_040874438.1  serine/arginine-rich splicing factor RSZ21 isoform X2

    UniProtKB/TrEMBL
    C6TFV9, I1KXH4
    Conserved Domains (2) summary
    pfam00098
    Location:88 → 102
    zf-CCHC; Zinc knuckle
    cd12373
    Location:3 → 71
    RRM_SRSF3_like; RNA recognition motif (RRM) found in serine/arginine-rich splicing factor 3 (SRSF3) and similar proteins

RNA

  1. XR_005892688.1 RNA Sequence

  2. XR_005892689.1 RNA Sequence

  3. XR_001389593.3 RNA Sequence

  4. XR_005892687.1 RNA Sequence

Nucleotide Protein
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