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LOC100813724 oxysterol-binding protein-related protein 4C [ Glycine max (soybean) ]

Gene ID: 100813724, updated on 11-Apr-2024

Summary

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Gene symbol
LOC100813724
Gene description
oxysterol-binding protein-related protein 4C
Locus tag
GLYMA_09G058900v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100813724 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
7
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 9 NC_038245.2 (5363712..5370175, complement)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 9 NC_038245.1 (5398176..5404609, complement)

Chromosome 9 - NC_038245.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100780386 Neighboring gene oxysterol-binding protein-related protein 4B Neighboring gene subtilisin-like protease SBT2.6 Neighboring gene probable proteasome inhibitor-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sterol binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intracellular membrane-bounded organelle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
oxysterol-binding protein-related protein 4C

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038245.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    5363712..5370175 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006586928.3 → XP_006586991.1  oxysterol-binding protein-related protein 4C isoform X2

    UniProtKB/TrEMBL
    I1L1D1
    Conserved Domains (1) summary
    pfam01237
    Location:49 → 360
    Oxysterol_BP; Oxysterol-binding protein

  2. XM_003533684.3 → XP_003533732.1  oxysterol-binding protein-related protein 4C isoform X1

    Conserved Domains (1) summary
    pfam01237
    Location:51 → 362
    Oxysterol_BP; Oxysterol-binding protein
Nucleotide Protein
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