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LOC100812345 putative tyrosine--tRNA ligase 1 [ Glycine max (soybean) ]

Gene ID: 100812345, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100812345
Gene description
putative tyrosine--tRNA ligase 1
Locus tag
GLYMA_11G065500v4
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100812345 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
10
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 11 NC_038247.2 (4938684..4942116, complement)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 11 NC_038247.1 (4945564..4948940, complement)

Chromosome 11 - NC_038247.2Genomic Context describing neighboring genes Neighboring gene scarecrow-like protein 15 Neighboring gene pentatricopeptide repeat-containing protein At5g39350-like Neighboring gene pentatricopeptide repeat-containing protein At4g38150 Neighboring gene vicilin-like seed storage protein At2g18540

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tyrosine-tRNA ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tRNA aminoacylation for protein translation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
putative tyrosine--tRNA ligase 1
Names
tyrosyl-tRNA synthetase-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001255168.3 → NP_001242097.2  putative tyrosine--tRNA ligase 1

    Status: VALIDATED

    Source sequence(s)
    ACUP04003801
    UniProtKB/TrEMBL
    C6TA79, I1LHP3
    Conserved Domains (1) summary
    PTZ00126
    Location:31 → 379
    PTZ00126; tyrosyl-tRNA synthetase; Provisional

RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038247.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    4938684..4942116 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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