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LOC100809908 cleavage stimulation factor subunit 50 [ Glycine max (soybean) ]

Gene ID: 100809908, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100809908
Gene description
cleavage stimulation factor subunit 50
Locus tag
GLYMA_06G205000v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100809908 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
14
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 6 NC_038242.2 (19186778..19191777, complement)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 6 NC_038242.1 (19370627..19375649, complement)

Chromosome 6 - NC_038242.2Genomic Context describing neighboring genes Neighboring gene zinc finger MYM-type protein 1 Neighboring gene tip elongation aberrant protein 1 Neighboring gene toll/interleukin-1 receptor-like protein Neighboring gene uncharacterized LOC106794242

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of mRNA cleavage stimulating factor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cleavage stimulation factor subunit 50

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038242.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    19186778..19191777 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003528187.5 → XP_003528235.1  cleavage stimulation factor subunit 50

    See identical proteins and their annotated locations for XP_003528235.1

    UniProtKB/TrEMBL
    I1KD31
    Conserved Domains (2) summary
    cd00200
    Location:108 → 422
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:121 → 170
    7WD40; WD40 repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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