U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC100809198 clathrin interactor EPSIN 1 [ Glycine max (soybean) ]

Gene ID: 100809198, updated on 7-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC100809198
Gene description
clathrin interactor EPSIN 1
Locus tag
GLYMA_14G091600v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC100809198 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
11
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 14 NC_038250.2 (8741263..8748064)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 14 NC_038250.1 (8490786..8497523)

Chromosome 14 - NC_038250.2Genomic Context describing neighboring genes Neighboring gene RNA pseudouridine synthase 3, mitochondrial-like Neighboring gene transcription factor RAX2 Neighboring gene piRNA biogenesis protein EXD1 Neighboring gene protein EARLY FLOWERING 3b

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables clathrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phospholipid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of clathrin vesicle coat IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
clathrin interactor EPSIN 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038250.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    8741263..8748064
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003544465.5 → XP_003544513.1  clathrin interactor EPSIN 1 isoform X2

    UniProtKB/TrEMBL
    A0A0R0FRF9, I1M8Y5
    Conserved Domains (1) summary
    cd03571
    Location:28 → 144
    ENTH; Epsin N-Terminal Homology (ENTH) domain family

  2. XM_041009273.1 → XP_040865207.1  clathrin interactor EPSIN 1 isoform X1

    UniProtKB/TrEMBL
    A0A0R0FRF9
    Conserved Domains (2) summary
    PRK14949
    Location:264 → 450
    PRK14949; DNA polymerase III subunits gamma and tau; Provisional
    cd03571
    Location:28 → 180
    ENTH; Epsin N-Terminal Homology (ENTH) domain family
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases