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LOC100808023 dynein light chain LC6, flagellar outer arm [ Glycine max (soybean) ]

Gene ID: 100808023, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100808023
Gene description
dynein light chain LC6, flagellar outer arm
Locus tag
GLYMA_02G070300v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100808023 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
2
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 2 NC_016089.4 (6148131..6152345)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 2 NC_016089.3 (6177167..6181384)

Chromosome 2 - NC_016089.4Genomic Context describing neighboring genes Neighboring gene NAC domain-containing protein 2 Neighboring gene exosome complex component RRP42 Neighboring gene uncharacterized LOC102665643 Neighboring gene glucan endo-1,3-beta-glucosidase 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables dynein intermediate chain binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables dynein light intermediate chain binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in microtubule-based process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of dynein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
dynein light chain LC6, flagellar outer arm

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_016089.4 Reference Glycine_max_v4.0 Primary Assembly

    Range
    6148131..6152345
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003518144.5 → XP_003518192.1  dynein light chain LC6, flagellar outer arm

    UniProtKB/TrEMBL
    I1JD37
    Conserved Domains (1) summary
    cl03131
    Location:1 → 133
    Dynein_light; Dynein light chain type 1
Nucleotide Protein
Heading Accession and Version

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