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LOC100806836 protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 [ Glycine max (soybean) ]

Gene ID: 100806836, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100806836
Gene description
protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1
Locus tag
GLYMA_12G183700v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100806836 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
8
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 12 NC_038248.2 (35937449..35944413, complement)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 12 NC_038248.1 (34470516..34477493, complement)

Chromosome 12 - NC_038248.2Genomic Context describing neighboring genes Neighboring gene protein HIRA Neighboring gene pentatricopeptide repeat-containing protein At2g27610 Neighboring gene zinc finger A20 and AN1 domain-containing stress-associated protein 3 Neighboring gene uncharacterized LOC121173208

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endosomal transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vacuole organization IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038248.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    35937449..35944413 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003540192.5 → XP_003540240.1  protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1

    UniProtKB/TrEMBL
    A0A0R0H530, I1LTU5
    Conserved Domains (4) summary
    cd02678
    Location:4 → 77
    MIT_VPS4; MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
    pfam09336
    Location:369 → 433
    Vps4_C; Vps4 C terminal oligomerization domain
    pfam17862
    Location:324 → 359
    AAA_lid_3; AAA+ lid domain
    cd19521
    Location:127 → 297
    RecA-like_VPS4; ATPase domain of vacuolar protein sorting-associated protein 4
Nucleotide Protein
Heading Accession and Version

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