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LOC100806404 zinc finger protein GAI-ASSOCIATED FACTOR 1 [ Glycine max (soybean) ]

Gene ID: 100806404, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100806404
Gene description
zinc finger protein GAI-ASSOCIATED FACTOR 1
Locus tag
GLYMA_01G176600v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100806404 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
4
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 1 NC_016088.4 (52442453..52446182)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 1 NC_016088.3 (51330345..51334128)

Chromosome 1 - NC_016088.4Genomic Context describing neighboring genes Neighboring gene ADP-ribosylation factor-like protein 2 Neighboring gene nucleolar protein 6 Neighboring gene pentatricopeptide repeat-containing protein At5g39350 Neighboring gene tyrosine--tRNA ligase 1, cytoplasmic

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein GAI-ASSOCIATED FACTOR 1
Names
protein indeterminate-domain 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_016088.4 Reference Glycine_max_v4.0 Primary Assembly

    Range
    52442453..52446182
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003517191.5 → XP_003517239.1  zinc finger protein GAI-ASSOCIATED FACTOR 1

    UniProtKB/TrEMBL
    I1J8W7
    Conserved Domains (2) summary
    sd00017
    Location:63 → 83
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:61 → 83
    zf-C2H2; Zinc finger, C2H2 type
Nucleotide Protein
Heading Accession and Version

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