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LOC100804885 CLPTM1-like membrane protein cnrB [ Glycine max (soybean) ]

Gene ID: 100804885, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100804885
Gene description
CLPTM1-like membrane protein cnrB
Locus tag
GLYMA_04G203800v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100804885 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
12
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 4 NC_016091.4 (46460620..46474033)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 4 NC_016091.3 (47641476..47654911)

Chromosome 4 - NC_016091.4Genomic Context describing neighboring genes Neighboring gene protein SUPPRESSOR OF GENE SILENCING 3 Neighboring gene putative pentatricopeptide repeat-containing protein At5g08490 Neighboring gene putative protein phosphatase inhibitor Neighboring gene putative esterase F42H10.6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in endomembrane system IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
CLPTM1-like membrane protein cnrB

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_016091.4 Reference Glycine_max_v4.0 Primary Assembly

    Range
    46460620..46474033
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003523140.5 → XP_003523188.1  CLPTM1-like membrane protein cnrB

    UniProtKB/TrEMBL
    I1JXT8
    Conserved Domains (1) summary
    pfam05602
    Location:27 → 459
    CLPTM1; Cleft lip and palate transmembrane protein 1 (CLPTM1)
Nucleotide Protein
Heading Accession and Version

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