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LOC100801484 exosome complex exonuclease RRP46 homolog [ Glycine max (soybean) ]

Gene ID: 100801484, updated on 11-Apr-2024

Summary

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Gene symbol
LOC100801484
Gene description
exosome complex exonuclease RRP46 homolog
Locus tag
GLYMA_18G230900v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100801484 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
8
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 18 NC_038254.2 (52237606..52242137)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 18 NC_038254.1 (51956603..51961228)

Chromosome 18 - NC_038254.2Genomic Context describing neighboring genes Neighboring gene O-glucosyltransferase rumi-like Neighboring gene FT-interacting protein 3 Neighboring gene putative ripening-related protein 1 Neighboring gene uncharacterized LOC106797059

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in U4 snRNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear mRNA surveillance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in poly(A)-dependent snoRNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in rRNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cytoplasmic exosome (RNase complex) IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of nuclear exosome (RNase complex) IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
exosome complex exonuclease RRP46 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038254.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    52237606..52242137
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003552336.4 → XP_003552384.1  exosome complex exonuclease RRP46 homolog

    See identical proteins and their annotated locations for XP_003552384.1

    UniProtKB/TrEMBL
    I1N3N7, K7MU78
    Conserved Domains (1) summary
    cd11372
    Location:14 → 228
    RNase_PH_RRP46; RRP46 subunit of eukaryotic exosome

  2. XM_006602722.3 → XP_006602785.1  exosome complex exonuclease RRP46 homolog

    See identical proteins and their annotated locations for XP_006602785.1

    UniProtKB/TrEMBL
    I1N3N7, K7MU78
    Conserved Domains (1) summary
    cd11372
    Location:14 → 228
    RNase_PH_RRP46; RRP46 subunit of eukaryotic exosome
Nucleotide Protein
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