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TGA25 bZIP transcription factor [ Glycine max (soybean) ]

Gene ID: 100799713, updated on 7-Dec-2023

Summary

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Gene symbol
TGA25
Gene description
bZIP transcription factor
Locus tag
GLYMA_19G145300v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
Also known as
GmTGA25
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Genomic context

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See TGA25 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
11
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 19 NC_038255.2 (41047361..41056504, complement)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 19 NC_038255.1 (40604175..40611543, complement)

Chromosome 19 - NC_038255.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100499912 Neighboring gene polygalacturonase inhibitor Neighboring gene FT-interacting protein 3 Neighboring gene TBCC domain-containing protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome-Wide Characterization and Expression Analysis of Soybean TGA Transcription Factors Identified a Novel TGA Gene Involved in Drought and Salt Tolerance. Li B, et al. Front Plant Sci, 2019. PMID 31156656, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
bZIP transcription factor TGA10

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038255.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    41047361..41056504 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003554148.4 → XP_003554196.1  bZIP transcription factor TGA10 isoform X2

    See identical proteins and their annotated locations for XP_003554196.1

    UniProtKB/TrEMBL
    K7MYF0
    Conserved Domains (3) summary
    cd14686
    Location:200 → 245
    bZIP; coiled coil [structural motif]
    pfam14144
    Location:290 → 364
    DOG1; Seed dormancy control
    cl21462
    Location:199 → 245
    bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain

  2. XM_006604319.4 → XP_006604382.1  bZIP transcription factor TGA10 isoform X1

    UniProtKB/TrEMBL
    A0A0R0EMF9
    Conserved Domains (3) summary
    cd14686
    Location:201 → 246
    bZIP; coiled coil [structural motif]
    pfam14144
    Location:291 → 365
    DOG1; Seed dormancy control
    cl21462
    Location:200 → 246
    bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain
Nucleotide Protein
Heading Accession and Version

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