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LOC100797330 DDB1- and CUL4-associated factor 8 [ Glycine max (soybean) ]

Gene ID: 100797330, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100797330
Gene description
DDB1- and CUL4-associated factor 8
Locus tag
GLYMA_15G044600v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100797330 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
5
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 15 NC_038251.2 (3542702..3545928, complement)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 15 NC_038251.1 (3556282..3559510, complement)

Chromosome 15 - NC_038251.2Genomic Context describing neighboring genes Neighboring gene ethylene-responsive transcription factor RAP2-7 Neighboring gene uncharacterized LOC100796804 Neighboring gene V-type proton ATPase subunit a1 Neighboring gene dof zinc finger protein DOF5.3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Cul4-RING E3 ubiquitin ligase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DDB1- and CUL4-associated factor 8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038251.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    3542702..3545928 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003546996.5 → XP_003547044.1  DDB1- and CUL4-associated factor 8

    See identical proteins and their annotated locations for XP_003547044.1

    UniProtKB/TrEMBL
    A0A368UI59
    Conserved Domains (2) summary
    sd00039
    Location:66 → 102
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:53 → 392
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein
Heading Accession and Version

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