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LOC100796613 oligopeptide transporter 3 [ Glycine max (soybean) ]

Gene ID: 100796613, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100796613
Gene description
oligopeptide transporter 3
Locus tag
GLYMA_07G267800v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100796613 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
6
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 7 NC_038243.2 (44430617..44435244)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 7 NC_038243.1 (44110549..44115233)

Chromosome 7 - NC_038243.2Genomic Context describing neighboring genes Neighboring gene protein PYRICULARIA ORYZAE RESISTANCE 21 Neighboring gene heavy metal-associated isoprenylated plant protein 7 Neighboring gene SNF1-related protein kinase regulatory subunit beta-2-like Neighboring gene uncharacterized LOC100797139

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables oligopeptide transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
oligopeptide transporter 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038243.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    44430617..44435244
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003529628.5 → XP_003529676.1  oligopeptide transporter 3

    UniProtKB/TrEMBL
    I1KNL0
    Conserved Domains (1) summary
    cl14607
    Location:23 → 706
    OPT; OPT oligopeptide transporter protein
Nucleotide Protein
Heading Accession and Version

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