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LOC100793492 probable E3 ubiquitin-protein ligase bre1 [ Glycine max (soybean) ]

Gene ID: 100793492, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100793492
Gene description
probable E3 ubiquitin-protein ligase bre1
Locus tag
GLYMA_09G223000v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100793492 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
2
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 9 NC_038245.2 (45222817..45227760, complement)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 9 NC_038245.1 (44354773..44359725, complement)

Chromosome 9 - NC_038245.2Genomic Context describing neighboring genes Neighboring gene gamma-tocopherol methyltransferase Neighboring gene uncharacterized LOC100792977 Neighboring gene embryogenesis-associated protein EMB8 Neighboring gene cytochrome P450 89A9-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of SWI/SNF complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable E3 ubiquitin-protein ligase bre1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038245.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    45222817..45227760 complement
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003534314.5 → XP_003534362.1  probable E3 ubiquitin-protein ligase bre1

    UniProtKB/TrEMBL
    I1L5G8
    Conserved Domains (1) summary
    pfam15249
    Location:143 → 258
    GLTSCR1; Conserved region of unknown function on GLTSCR protein
Nucleotide Protein
Heading Accession and Version

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