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LOC100788779 oxysterol-binding protein-related protein 1D [ Glycine max (soybean) ]

Gene ID: 100788779, updated on 11-Apr-2024

Summary

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Gene symbol
LOC100788779
Gene description
oxysterol-binding protein-related protein 1D
Locus tag
GLYMA_18G012500v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100788779 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
8
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 18 NC_038254.2 (879575..887247)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 18 NC_038254.1 (880153..887467)

Chromosome 18 - NC_038254.2Genomic Context describing neighboring genes Neighboring gene probable pectate lyase 5 Neighboring gene T-complex protein 1 subunit epsilon Neighboring gene protein terminal ear1 Neighboring gene putative multidrug resistance protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sterol binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intracellular membrane-bounded organelle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
oxysterol-binding protein-related protein 1D

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038254.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    879575..887247
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003551907.5 → XP_003551955.1  oxysterol-binding protein-related protein 1D

    UniProtKB/TrEMBL
    I1MYL8
    Conserved Domains (2) summary
    pfam01237
    Location:443 → 793
    Oxysterol_BP; Oxysterol-binding protein
    cl17171
    Location:94 → 237
    PH-like; Pleckstrin homology-like domain
Nucleotide Protein
Heading Accession and Version

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