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LOC100785164 zinc finger transcription factor YY1 [ Glycine max (soybean) ]

Gene ID: 100785164, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100785164
Gene description
zinc finger transcription factor YY1
Locus tag
GLYMA_08G126300v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100785164 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
6
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 8 NC_038244.2 (9734629..9738895)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 8 NC_038244.1 (9732001..9736105)

Chromosome 8 - NC_038244.2Genomic Context describing neighboring genes Neighboring gene acetolactate synthase small subunit 2, chloroplastic Neighboring gene guanosine nucleotide diphosphate dissociation inhibitor 2 Neighboring gene ubiquitin-like domain-containing CTD phosphatase-like Neighboring gene bZIP transcription factor 63

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of PcG protein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger transcription factor YY1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038244.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    9734629..9738895
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003531246.4 → XP_003531294.1  zinc finger transcription factor YY1 isoform X2

    UniProtKB/TrEMBL
    C6THB4, I1KSQ4
    Conserved Domains (3) summary
    COG5048
    Location:77 → 194
    COG5048; FOG: Zn-finger [General function prediction only]
    COG5189
    Location:228 → 263
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:82 → 101
    ZF_C2H2; C2H2 Zn finger [structural motif]

  2. XM_006585154.3 → XP_006585217.1  zinc finger transcription factor YY1 isoform X1

    UniProtKB/TrEMBL
    C6THB4, K7L6A1
    Conserved Domains (3) summary
    COG5048
    Location:77 → 193
    COG5048; FOG: Zn-finger [General function prediction only]
    COG5189
    Location:168 → 256
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:82 → 101
    ZF_C2H2; C2H2 Zn finger [structural motif]
Nucleotide Protein
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