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LOC100780043 probable methyltransferase PMT3 [ Glycine max (soybean) ]

Gene ID: 100780043, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100780043
Gene description
probable methyltransferase PMT3
Locus tag
GLYMA_02G002900v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100780043 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
9
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 2 NC_016089.4 (328724..334918, complement)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 2 NC_016089.3 (328491..334882, complement)

Chromosome 2 - NC_016089.4Genomic Context describing neighboring genes Neighboring gene somatic embryogenesis receptor kinase 2-like Neighboring gene 60S ribosomal protein L7a-1 Neighboring gene uncharacterized LOC100526876 Neighboring gene nucleolar protein 14

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable methyltransferase PMT3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_016089.4 Reference Glycine_max_v4.0 Primary Assembly

    Range
    328724..334918 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003519419.5 → XP_003519467.1  probable methyltransferase PMT3

    See identical proteins and their annotated locations for XP_003519467.1

    UniProtKB/TrEMBL
    I1JB59
    Conserved Domains (1) summary
    pfam03141
    Location:101 → 612
    Methyltransf_29; Putative S-adenosyl-L-methionine-dependent methyltransferase

  2. XM_014764010.3 → XP_014619496.1  probable methyltransferase PMT3

    UniProtKB/TrEMBL
    I1JB59
    Conserved Domains (1) summary
    pfam03141
    Location:101 → 612
    Methyltransf_29; Putative S-adenosyl-L-methionine-dependent methyltransferase

  3. XM_026124408.2 → XP_025980193.1  probable methyltransferase PMT3

    UniProtKB/TrEMBL
    I1JB59
    Conserved Domains (1) summary
    pfam03141
    Location:101 → 612
    Methyltransf_29; Putative S-adenosyl-L-methionine-dependent methyltransferase
Nucleotide Protein
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