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LOC100779714 probable phospholipid-transporting ATPase 8 [ Glycine max (soybean) ]

Gene ID: 100779714, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100779714
Gene description
probable phospholipid-transporting ATPase 8
Locus tag
GLYMA_19G007400v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100779714 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
11
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 19 NC_038255.2 (734863..745540)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 19 NC_038255.1 (739795..750457)

Chromosome 19 - NC_038255.2Genomic Context describing neighboring genes Neighboring gene cinnamoyl-CoA reductase-like SNL6 Neighboring gene serine/threonine-protein kinase BLUS1 Neighboring gene uncharacterized LOC121174156 Neighboring gene uncharacterized LOC102669230

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATPase-coupled intramembrane lipid transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables magnesium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in phospholipid translocation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable phospholipid-transporting ATPase 8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038255.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    734863..745540
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003553781.5 → XP_003553829.1  probable phospholipid-transporting ATPase 8

    See identical proteins and their annotated locations for XP_003553829.1

    UniProtKB/TrEMBL
    A0A0R0EHJ7, I1N5P8
    Conserved Domains (1) summary
    TIGR01652
    Location:55 → 1154
    ATPase-Plipid; phospholipid-translocating P-type ATPase, flippase
Nucleotide Protein
Heading Accession and Version

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