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LOC100778772 oxysterol-binding protein-related protein 4B [ Glycine max (soybean) ]

Gene ID: 100778772, updated on 11-Apr-2024

Summary

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Gene symbol
LOC100778772
Gene description
oxysterol-binding protein-related protein 4B
Locus tag
GLYMA_17G059900v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100778772 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
8
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 17 NC_038253.2 (4544914..4550778)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 17 NC_038253.1 (4542560..4548520)

Chromosome 17 - NC_038253.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100818700 Neighboring gene subtilisin-like protease SBT2.5 Neighboring gene oxysterol-binding protein-related protein 4B Neighboring gene oxysterol-binding protein-related protein 4B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sterol binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intracellular membrane-bounded organelle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
oxysterol-binding protein-related protein 4B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038253.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    4544914..4550778
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041011368.1 → XP_040867302.1  oxysterol-binding protein-related protein 4B isoform X2

  2. XM_003549265.5 → XP_003549313.1  oxysterol-binding protein-related protein 4B isoform X1

    See identical proteins and their annotated locations for XP_003549313.1

    UniProtKB/TrEMBL
    K7MK54
    Conserved Domains (1) summary
    pfam01237
    Location:47 → 359
    Oxysterol_BP; Oxysterol-binding protein

RNA

  1. XR_005889414.1 RNA Sequence

  2. XR_001385888.3 RNA Sequence

Nucleotide Protein
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