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LOC100778710 probable phospholipid-transporting ATPase 4 [ Glycine max (soybean) ]

Gene ID: 100778710, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100778710
Gene description
probable phospholipid-transporting ATPase 4
Locus tag
GLYMA_13G348200v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100778710 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
13
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 13 NC_038249.2 (43189163..43196450, complement)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 13 NC_038249.1 (43822562..43829915, complement)

Chromosome 13 - NC_038249.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100305940 Neighboring gene casein kinase 1-like protein 2 Neighboring gene uncharacterized LOC121173355 Neighboring gene serine/threonine-protein phosphatase 7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATPase-coupled intramembrane lipid transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables magnesium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in phospholipid translocation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable phospholipid-transporting ATPase 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038249.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    43189163..43196450 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006595021.4 → XP_006595084.1  probable phospholipid-transporting ATPase 4

    See identical proteins and their annotated locations for XP_006595084.1

    UniProtKB/TrEMBL
    A0A0R0G4K9, K7M3L6
    Conserved Domains (5) summary
    TIGR01652
    Location:58 → 1166
    ATPase-Plipid; phospholipid-translocating P-type ATPase, flippase
    pfam13246
    Location:546 → 652
    Cation_ATPase; Cation transport ATPase (P-type)
    pfam16209
    Location:42 → 108
    PhoLip_ATPase_N; Phospholipid-translocating ATPase N-terminal
    pfam16212
    Location:908 → 1159
    PhoLip_ATPase_C; Phospholipid-translocating P-type ATPase C-terminal
    cl21460
    Location:858 → 908
    HAD_like; Haloacid Dehalogenase-like Hydrolases

  2. XM_014766107.3 → XP_014621593.1  probable phospholipid-transporting ATPase 4

    UniProtKB/TrEMBL
    A0A0R0G4K9, K7M3L6
    Conserved Domains (5) summary
    TIGR01652
    Location:58 → 1166
    ATPase-Plipid; phospholipid-translocating P-type ATPase, flippase
    pfam13246
    Location:546 → 652
    Cation_ATPase; Cation transport ATPase (P-type)
    pfam16209
    Location:42 → 108
    PhoLip_ATPase_N; Phospholipid-translocating ATPase N-terminal
    pfam16212
    Location:908 → 1159
    PhoLip_ATPase_C; Phospholipid-translocating P-type ATPase C-terminal
    cl21460
    Location:858 → 908
    HAD_like; Haloacid Dehalogenase-like Hydrolases

  3. XM_006595022.4 → XP_006595085.1  probable phospholipid-transporting ATPase 4

    See identical proteins and their annotated locations for XP_006595085.1

    UniProtKB/TrEMBL
    A0A0R0G4K9, K7M3L6
    Conserved Domains (5) summary
    TIGR01652
    Location:58 → 1166
    ATPase-Plipid; phospholipid-translocating P-type ATPase, flippase
    pfam13246
    Location:546 → 652
    Cation_ATPase; Cation transport ATPase (P-type)
    pfam16209
    Location:42 → 108
    PhoLip_ATPase_N; Phospholipid-translocating ATPase N-terminal
    pfam16212
    Location:908 → 1159
    PhoLip_ATPase_C; Phospholipid-translocating P-type ATPase C-terminal
    cl21460
    Location:858 → 908
    HAD_like; Haloacid Dehalogenase-like Hydrolases

  4. XM_003543534.5 → XP_003543582.1  probable phospholipid-transporting ATPase 4

    See identical proteins and their annotated locations for XP_003543582.1

    UniProtKB/TrEMBL
    A0A0R0G4K9, K7M3L6
    Conserved Domains (5) summary
    TIGR01652
    Location:58 → 1166
    ATPase-Plipid; phospholipid-translocating P-type ATPase, flippase
    pfam13246
    Location:546 → 652
    Cation_ATPase; Cation transport ATPase (P-type)
    pfam16209
    Location:42 → 108
    PhoLip_ATPase_N; Phospholipid-translocating ATPase N-terminal
    pfam16212
    Location:908 → 1159
    PhoLip_ATPase_C; Phospholipid-translocating P-type ATPase C-terminal
    cl21460
    Location:858 → 908
    HAD_like; Haloacid Dehalogenase-like Hydrolases
Nucleotide Protein
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