LOC100536511 RING finger protein 148 [Danio rerio (zebrafish)] - Gene

Summary

Gene symbol: LOC100536511
Gene description: RING finger protein 148
Gene type: protein coding
RefSeq status: MODEL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Orthologs: all
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Genomic context

Location:: chromosome: 14

Exon count:: 7

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	14	NC_007125.7 (9432599..9451473)
105	previous assembly	GRCz10 (GCF_000002035.5)	14	NC_007125.6 (9134291..9144544)

Chromosome 14 - NC_007125.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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Homology

NCBI Orthologs

Orthologs from OrthoDB

General protein information

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Preferred Names: E3 ubiquitin-protein ligase RNF128; RING finger protein 148

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007125.7 Reference GRCz11 Primary Assembly

Range

9432599..9451473

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_021481307.2 → XP_021336982.2 RING finger protein 148 isoform X1

UniProtKB/TrEMBL

A0A8M9Q025
XM_068213307.1 → XP_068069408.1 RING finger protein 148 isoform X2

UniProtKB/TrEMBL

A0A8M9Q025

Reference GRCz11 ALT_DRER_TU_1

Genomic

NW_018394893.1 Reference GRCz11 ALT_DRER_TU_1

Range

504572..517742

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_021472752.2 → XP_021328427.2 E3 ubiquitin-protein ligase RNF128 isoform X3

Reference GRCz11 ALT_DRER_TU_2

Genomic

NW_018395311.1 Reference GRCz11 ALT_DRER_TU_2

Range

188010..206587

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_068219323.1 → XP_068075424.1 RING finger protein 148 isoform X2

UniProtKB/TrEMBL

A0A8M9Q025
XM_021474298.2 → XP_021329973.1 RING finger protein 148 isoform X1

UniProtKB/TrEMBL

A0A8M9PSH3, A0A8M9Q025

Conserved Domains (3) summary

cd02122
Location:47 → 179

PA_GRAIL_like; PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ...

cl17238
Location:262 → 308

RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

cl26329
Location:188 → 303

zf-rbx1; RING-H2 zinc finger domain