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cidea cell death inducing DFFA like effector a [ Danio rerio (zebrafish) ]

Gene ID: 100536460, updated on 9-Dec-2024

Summary

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Official Symbol
cideaprovided by ZNC
Official Full Name
cell death inducing DFFA like effector aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-091204-339
See related
Ensembl:ENSDARG00000098245 AllianceGenome:ZFIN:ZDB-GENE-091204-339
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
si:ch211-9a18.4
Summary
Predicted to be involved in regulation of apoptotic process. Human ortholog(s) of this gene implicated in obesity. Orthologous to human CIDEA (cell death inducing DFFA like effector a). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
all
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Genomic context

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See cidea in Genome Data Viewer
Location:
chromosome: 24
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 24 NC_007135.7 (2950094..2959179, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 24 NC_007135.6 (2951355..2960396, complement)

Chromosome 24 - NC_007135.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137489201 Neighboring gene uncharacterized LOC103909736 Neighboring gene tubulin, beta 6 class V Neighboring gene enoyl-CoA delta isomerase 2 Neighboring gene uncharacterized LOC110438346 Neighboring gene succinyl-CoA:glutarate-CoA transferase Neighboring gene inhibin subunit beta Aa

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Identification of vascular and hematopoietic genes downstream of etsrp by deep sequencing in zebrafish. Gomez G, et al. PLoS One, 2012. PMID 22438865, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
acts_upstream_of_or_within apoptotic process IEA
Inferred from Electronic Annotation
more info
  
involved_in apoptotic process IEA
Inferred from Electronic Annotation
more info
  
involved_in regulation of apoptotic process IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
lipid transferase CIDEA

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007135.7 Reference GRCz11 Primary Assembly

    Range
    2950094..2959179 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003201265.6 → XP_003201313.1  lipid transferase CIDEA

    UniProtKB/TrEMBL
    A0A0R4ILF6, A0A8M1RJK7
    Related
    ENSDARP00000136004.1, ENSDART00000170525.2
    Conserved Domains (1) summary
    pfam02017
    Location:33 → 108
    CIDE-N; CIDE-N domain
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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