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si:ch211-210b2.4 si:ch211-210b2.4 [ Danio rerio (zebrafish) ]

Gene ID: 100535908, updated on 9-Dec-2024

Summary

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Official Symbol
si:ch211-210b2.4provided by ZNC
Official Full Name
si:ch211-210b2.4provided by ZNC
Primary source
ZFIN:ZDB-GENE-131122-12
See related
Ensembl:ENSDARG00000095212 AllianceGenome:ZFIN:ZDB-GENE-131122-12
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to enable transmembrane transporter binding activity. Predicted to be active in plasma membrane. Orthologous to several human genes including TCAF1 (TRPM8 channel associated factor 1) and TCAF2 (TRPM8 channel associated factor 2). [provided by Alliance of Genome Resources, Dec 2024]
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Genomic context

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See si:ch211-210b2.4 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 15 NC_007126.7 (647800..651717, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 15 NC_007126.6 (686939..692214, complement)

Chromosome 15 - NC_007126.7Genomic Context describing neighboring genes Neighboring gene arachidonate 5-lipoxygenase b, tandem duplicate 3 Neighboring gene si:ch73-144d13.7 Neighboring gene zinc finger protein 585A Neighboring gene si:ch211-210b2.3 Neighboring gene si:ch211-210b2.2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables transmembrane transporter binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
TRPM8 channel-associated factor homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007126.7 Reference GRCz11 Primary Assembly

    Range
    647800..651717 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017351120.3 → XP_017206609.1  TRPM8 channel-associated factor homolog

    UniProtKB/TrEMBL
    A0A8M6YT66, X1WD01
    Related
    ENSDARP00000128098.1, ENSDART00000156860.2
    Conserved Domains (1) summary
    pfam13402
    Location:519 → 886
    Peptidase_M60; Peptidase M60, enhancin and enhancin-like
Nucleotide Protein Strain
Heading Accession and Version

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