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uimc1 ubiquitin interaction motif containing 1 [ Danio rerio (zebrafish) ]

Gene ID: 100535018, updated on 9-Dec-2024

Summary

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Official Symbol
uimc1provided by ZNC
Official Full Name
ubiquitin interaction motif containing 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-101006-1
See related
AllianceGenome:ZFIN:ZDB-GENE-101006-1
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to enable K63-linked polyubiquitin modification-dependent protein binding activity. Predicted to act upstream of or within chromatin organization and double-strand break repair. Predicted to be located in nucleus. Predicted to be part of BRCA1-A complex. Orthologous to human UIMC1 (ubiquitin interaction motif containing 1). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
all
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Genomic context

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See uimc1 in Genome Data Viewer
Location:
chromosome: 21
Exon count:
18
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 21 NC_007132.7 (37049937..37089857, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 21 NC_007132.6 (37364750..37404702, complement)

Chromosome 21 - NC_007132.7Genomic Context describing neighboring genes Neighboring gene drebrin 1 Neighboring gene zgc:77151 Neighboring gene small Cajal body-specific RNA 14 Neighboring gene zinc finger protein 346 Neighboring gene fibroblast growth factor receptor 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables K63-linked polyubiquitin modification-dependent protein binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within DNA damage response IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within DNA repair IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within chromatin organization IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within double-strand break repair IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of BRCA1-A complex IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
BRCA1-A complex subunit RAP80

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007132.7 Reference GRCz11 Primary Assembly

    Range
    37049937..37089857 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003200891.6 → XP_003200939.1  BRCA1-A complex subunit RAP80

    UniProtKB/TrEMBL
    A0A8M1RMY1
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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