U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

CKAP2L cytoskeleton associated protein 2 like [ Sus scrofa (pig) ]

Gene ID: 100516489, updated on 17-Aug-2024

Summary

Go to the top of the page Help
Official Symbol
CKAP2Lprovided by VGNC
Official Full Name
cytoskeleton associated protein 2 likeprovided by VGNC
Primary source
VGNC:VGNC:86715
See related
Ensembl:ENSSSCG00000008089
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Broad expression in ovary (RPKM 2.1), spleen (RPKM 2.0) and 8 other tissues See more
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See CKAP2L in Genome Data Viewer
Location:
chromosome: 3
Exon count:
11
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 3 NC_010445.4 (43736526..43772995)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 3 NC_010445.3 (45411670..45434330, complement)

Chromosome 3 - NC_010445.4Genomic Context describing neighboring genes Neighboring gene interleukin 1 beta Neighboring gene interleukin 1 alpha Neighboring gene 5'-nucleotidase domain containing 4 Neighboring gene solute carrier family 20 member 1

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in centrosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitotic spindle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
cytoskeleton-associated protein 2-like

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010445.4 Reference Sscrofa11.1 Primary Assembly

    Range
    43736526..43772995
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021087021.1 → XP_020942680.1  cytoskeleton-associated protein 2-like isoform X2

    UniProtKB/TrEMBL
    A0A4X1V2E6, A0A8D0TY14
    Conserved Domains (1) summary
    pfam15297
    Location:455 → 749
    CKAP2_C; Cytoskeleton-associated protein 2 C-terminus

  2. XM_021087020.1 → XP_020942679.1  cytoskeleton-associated protein 2-like isoform X1

    UniProtKB/TrEMBL
    A0A4X1UYM4, A0A8D0XSY6, F1SUB8
    Related
    ENSSSCP00000008637.3, ENSSSCT00000008862.4
    Conserved Domains (1) summary
    pfam15297
    Location:466 → 760
    CKAP2_C; Cytoskeleton-associated protein 2 C-terminus
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials