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ZNF169 zinc finger protein 169 [ Sus scrofa (pig) ]

Gene ID: 100515432, updated on 17-Aug-2024

Summary

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Official Symbol
ZNF169provided by VGNC
Official Full Name
zinc finger protein 169provided by VGNC
Primary source
VGNC:VGNC:98420
See related
Ensembl:ENSSSCG00000032834
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in spleen (RPKM 1.1), kidney (RPKM 0.9) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See ZNF169 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
10
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 3 NC_010445.4 (43503225..43561299)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 3 NC_010445.3 (44956020..44963137)

Chromosome 3 - NC_010445.4Genomic Context describing neighboring genes Neighboring gene microRNA let-7f-2 Neighboring gene microRNA let-7d Neighboring gene interleukin 1 beta Neighboring gene interleukin 1 alpha

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription repressor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein 169

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010445.4 Reference Sscrofa11.1 Primary Assembly

    Range
    43503225..43561299
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021087016.1 → XP_020942675.1  zinc finger protein 169 isoform X7

    UniProtKB/TrEMBL
    A0A4X1UY33, A0A8D0R1H6
    Conserved Domains (2) summary
    COG5048
    Location:163 → 529
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:345 → 365
    ZF_C2H2; C2H2 Zn finger [structural motif]

  2. XM_021087002.1 → XP_020942661.1  zinc finger protein 169 isoform X1

    UniProtKB/TrEMBL
    A0A8D0QS30
    Conserved Domains (3) summary
    smart00349
    Location:32 → 91
    KRAB; krueppel associated box
    COG5048
    Location:237 → 603
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:419 → 439
    ZF_C2H2; C2H2 Zn finger [structural motif]

  3. XM_021087005.1 → XP_020942664.1  zinc finger protein 169 isoform X1

    UniProtKB/TrEMBL
    A0A8D0QS30
    Conserved Domains (3) summary
    smart00349
    Location:32 → 91
    KRAB; krueppel associated box
    COG5048
    Location:237 → 603
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:419 → 439
    ZF_C2H2; C2H2 Zn finger [structural motif]

  4. XM_021087009.1 → XP_020942668.1  zinc finger protein 169 isoform X4

    UniProtKB/TrEMBL
    A0A8D0PG64, A0A8D0QS30
    Conserved Domains (3) summary
    smart00349
    Location:1 → 60
    KRAB; krueppel associated box
    COG5048
    Location:206 → 572
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:388 → 408
    ZF_C2H2; C2H2 Zn finger [structural motif]

  5. XM_021087014.1 → XP_020942673.1  zinc finger protein 169 isoform X5

    UniProtKB/TrEMBL
    A0A287BFC4, A0A4X1UXR7, A0A8D0QS30, A0A8D1W8Q0
    Related
    ENSSSCP00000054775.2, ENSSSCT00000045315.3
    Conserved Domains (3) summary
    smart00349
    Location:1 → 60
    KRAB; krueppel associated box
    COG5048
    Location:205 → 571
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:387 → 407
    ZF_C2H2; C2H2 Zn finger [structural motif]

  6. XM_021087017.1 → XP_020942676.1  zinc finger protein 169 isoform X8

    UniProtKB/TrEMBL
    A0A4X1UY33, A0A8D0R1H6
    Conserved Domains (2) summary
    COG5048
    Location:154 → 520
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:336 → 356
    ZF_C2H2; C2H2 Zn finger [structural motif]

  7. XM_021087001.1 → XP_020942660.1  zinc finger protein 169 isoform X1

    UniProtKB/TrEMBL
    A0A8D0QS30
    Conserved Domains (3) summary
    smart00349
    Location:32 → 91
    KRAB; krueppel associated box
    COG5048
    Location:237 → 603
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:419 → 439
    ZF_C2H2; C2H2 Zn finger [structural motif]

  8. XM_021087006.1 → XP_020942665.1  zinc finger protein 169 isoform X2

    UniProtKB/TrEMBL
    A0A8D0QS30, A0A8D0WWJ9
    Conserved Domains (3) summary
    smart00349
    Location:32 → 91
    KRAB; krueppel associated box
    COG5048
    Location:236 → 602
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:418 → 438
    ZF_C2H2; C2H2 Zn finger [structural motif]

  9. XM_021087008.1 → XP_020942667.1  zinc finger protein 169 isoform X3

    UniProtKB/TrEMBL
    A0A287AMD2, A0A4X1UXW8, A0A8D0QRZ8
    Conserved Domains (3) summary
    smart00349
    Location:14 → 73
    KRAB; krueppel associated box
    COG5048
    Location:219 → 585
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:401 → 421
    ZF_C2H2; C2H2 Zn finger [structural motif]

  10. XM_021087010.1 → XP_020942669.1  zinc finger protein 169 isoform X4

    UniProtKB/TrEMBL
    A0A8D0PG64, A0A8D0QS30
    Conserved Domains (3) summary
    smart00349
    Location:1 → 60
    KRAB; krueppel associated box
    COG5048
    Location:206 → 572
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:388 → 408
    ZF_C2H2; C2H2 Zn finger [structural motif]

  11. XM_021087007.1 → XP_020942666.1  zinc finger protein 169 isoform X3

    UniProtKB/TrEMBL
    A0A287AMD2, A0A4X1UXW8, A0A8D0QRZ8
    Conserved Domains (3) summary
    smart00349
    Location:14 → 73
    KRAB; krueppel associated box
    COG5048
    Location:219 → 585
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:401 → 421
    ZF_C2H2; C2H2 Zn finger [structural motif]

  12. XM_021087003.1 → XP_020942662.1  zinc finger protein 169 isoform X1

    UniProtKB/TrEMBL
    A0A8D0QS30
    Conserved Domains (3) summary
    smart00349
    Location:32 → 91
    KRAB; krueppel associated box
    COG5048
    Location:237 → 603
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:419 → 439
    ZF_C2H2; C2H2 Zn finger [structural motif]

  13. XM_021087011.1 → XP_020942670.1  zinc finger protein 169 isoform X4

    UniProtKB/TrEMBL
    A0A8D0PG64, A0A8D0QS30
    Conserved Domains (3) summary
    smart00349
    Location:1 → 60
    KRAB; krueppel associated box
    COG5048
    Location:206 → 572
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:388 → 408
    ZF_C2H2; C2H2 Zn finger [structural motif]

  14. XM_021087012.1 → XP_020942671.1  zinc finger protein 169 isoform X4

    UniProtKB/TrEMBL
    A0A8D0PG64, A0A8D0QS30
    Conserved Domains (3) summary
    smart00349
    Location:1 → 60
    KRAB; krueppel associated box
    COG5048
    Location:206 → 572
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:388 → 408
    ZF_C2H2; C2H2 Zn finger [structural motif]

  15. XM_021087013.1 → XP_020942672.1  zinc finger protein 169 isoform X4

    UniProtKB/TrEMBL
    A0A8D0PG64, A0A8D0QS30
    Conserved Domains (3) summary
    smart00349
    Location:1 → 60
    KRAB; krueppel associated box
    COG5048
    Location:206 → 572
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:388 → 408
    ZF_C2H2; C2H2 Zn finger [structural motif]

  16. XM_021087015.1 → XP_020942674.1  zinc finger protein 169 isoform X6

    UniProtKB/TrEMBL
    A0A4X1UY33, A0A8D0R1H6
    Conserved Domains (2) summary
    COG5048
    Location:164 → 530
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:346 → 366
    ZF_C2H2; C2H2 Zn finger [structural motif]

  17. XM_021087018.1 → XP_020942677.1  zinc finger protein 169 isoform X8

    UniProtKB/TrEMBL
    A0A4X1UY33, A0A8D0R1H6
    Conserved Domains (2) summary
    COG5048
    Location:154 → 520
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:336 → 356
    ZF_C2H2; C2H2 Zn finger [structural motif]

  18. XM_021087019.1 → XP_020942678.1  zinc finger protein 169 isoform X9

    UniProtKB/TrEMBL
    A0A4X1UY33, A0A8D0R1H6
    Conserved Domains (2) summary
    COG5048
    Location:144 → 510
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:326 → 346
    ZF_C2H2; C2H2 Zn finger [structural motif]
Nucleotide Protein
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