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ATF7IP activating transcription factor 7 interacting protein [ Sus scrofa (pig) ]

Gene ID: 100513013, updated on 14-Nov-2024

Summary

Official Symbol
ATF7IPprovided by VGNC
Official Full Name
activating transcription factor 7 interacting proteinprovided by VGNC
Primary source
VGNC:VGNC:85611
See related
Ensembl:ENSSSCG00000000612
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in spleen (RPKM 3.9), lung (RPKM 3.5) and 8 other tissues See more
Orthologs
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Genomic context

See ATF7IP in Genome Data Viewer
Location:
chromosome: 5
Exon count:
19
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 5 NC_010447.5 (58022734..58149980, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 5 NC_010447.4 (61444254..61571493, complement)

Chromosome 5 - NC_010447.5Genomic Context describing neighboring genes Neighboring gene guanylate cyclase 2C Neighboring gene phospholipase B domain containing 1 Neighboring gene glutamate ionotropic receptor NMDA type subunit 2B Neighboring gene ferritin light chain-like

Genomic regions, transcripts, and products

Expression

  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

General gene information

Markers

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
PubMed 
enables transcription coregulator activity IEA
Inferred from Electronic Annotation
more info
PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
PubMed 
part_of transcription regulator complex IEA
Inferred from Electronic Annotation
more info
PubMed 

General protein information

Preferred Names
activating transcription factor 7-interacting protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010447.5 Reference Sscrofa11.1 Primary Assembly

    Range
    58022734..58149980 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003126462.5XP_003126510.2  activating transcription factor 7-interacting protein 1 isoform X2

    See identical proteins and their annotated locations for XP_003126510.2

    UniProtKB/TrEMBL
    A0A0B8S0B8, A0A287A8A1, A0A4X1V8L9, A0A8D1QM16
    Related
    ENSSSCP00000034532.2, ENSSSCT00000052005.3
    Conserved Domains (5) summary
    pfam16788
    Location:569779
    ATF7IP_BD; ATF-interacting protein binding domain
    pfam16794
    Location:11651265
    fn3_4; Fibronectin-III type domain
    cl00478
    Location:148333
    LGT; Prolipoprotein diacylglyceryl transferase
    cl26464
    Location:6631163
    Atrophin-1; Atrophin-1 family
    cl26761
    Location:309583
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
  2. XM_005664060.3XP_005664117.1  activating transcription factor 7-interacting protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A4X1V8N6, A0A8D1QKR3
    Conserved Domains (2) summary
    pfam16788
    Location:577788
    ATF7IP_BD; ATF-interacting protein binding domain
    pfam16794
    Location:11731273
    fn3_4; Fibronectin-III type domain
  3. XM_021092312.1XP_020947971.1  activating transcription factor 7-interacting protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A0B8S0B8, A0A287A8A1, A0A4X1V8L9, A0A8D1QM16
    Conserved Domains (5) summary
    pfam16788
    Location:569779
    ATF7IP_BD; ATF-interacting protein binding domain
    pfam16794
    Location:11651265
    fn3_4; Fibronectin-III type domain
    cl00478
    Location:148333
    LGT; Prolipoprotein diacylglyceryl transferase
    cl26464
    Location:6631163
    Atrophin-1; Atrophin-1 family
    cl26761
    Location:309583
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
  4. XM_021092311.1XP_020947970.1  activating transcription factor 7-interacting protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A0B8S0B8, A0A287A8A1, A0A4X1V8L9, A0A8D1QM16
    Conserved Domains (5) summary
    pfam16788
    Location:569779
    ATF7IP_BD; ATF-interacting protein binding domain
    pfam16794
    Location:11651265
    fn3_4; Fibronectin-III type domain
    cl00478
    Location:148333
    LGT; Prolipoprotein diacylglyceryl transferase
    cl26464
    Location:6631163
    Atrophin-1; Atrophin-1 family
    cl26761
    Location:309583
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
  5. XM_021092310.1XP_020947969.1  activating transcription factor 7-interacting protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A0B8S0B8, A0A287A8A1, A0A4X1V8L9, A0A8D1QM16
    Conserved Domains (5) summary
    pfam16788
    Location:569779
    ATF7IP_BD; ATF-interacting protein binding domain
    pfam16794
    Location:11651265
    fn3_4; Fibronectin-III type domain
    cl00478
    Location:148333
    LGT; Prolipoprotein diacylglyceryl transferase
    cl26464
    Location:6631163
    Atrophin-1; Atrophin-1 family
    cl26761
    Location:309583
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
  6. XM_005664061.3XP_005664118.1  activating transcription factor 7-interacting protein 1 isoform X2

    See identical proteins and their annotated locations for XP_005664118.1

    UniProtKB/TrEMBL
    A0A0B8S0B8, A0A287A8A1, A0A4X1V8L9, A0A8D1QM16
    Conserved Domains (5) summary
    pfam16788
    Location:569779
    ATF7IP_BD; ATF-interacting protein binding domain
    pfam16794
    Location:11651265
    fn3_4; Fibronectin-III type domain
    cl00478
    Location:148333
    LGT; Prolipoprotein diacylglyceryl transferase
    cl26464
    Location:6631163
    Atrophin-1; Atrophin-1 family
    cl26761
    Location:309583
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
  7. XM_021092313.1XP_020947972.1  activating transcription factor 7-interacting protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A0B8S0B8, A0A287A8A1, A0A4X1V8L9, A0A8D1QM16
    Conserved Domains (5) summary
    pfam16788
    Location:569779
    ATF7IP_BD; ATF-interacting protein binding domain
    pfam16794
    Location:11651265
    fn3_4; Fibronectin-III type domain
    cl00478
    Location:148333
    LGT; Prolipoprotein diacylglyceryl transferase
    cl26464
    Location:6631163
    Atrophin-1; Atrophin-1 family
    cl26761
    Location:309583
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]