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LINC02616 long intergenic non-protein coding RNA 2616 [ Homo sapiens (human) ]

Gene ID: 100508631, updated on 10-Dec-2024

Summary

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Official Symbol
LINC02616provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2616provided by HGNC
Primary source
HGNC:HGNC:54078
See related
Ensembl:ENSG00000261761 AllianceGenome:HGNC:54078
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Annotation information
Annotation category: suggests misassembly
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC02616 in Genome Data Viewer
Location:
4p14
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (37001779..37020706)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (36970245..36989163)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (37003401..37022328)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene microRNA 1255b-1 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_78488 Neighboring gene F-box protein 38 pseudogene Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_78504 Neighboring gene ReSE screen-validated silencer GRCh37_chr4:36527157-36527318 Neighboring gene long intergenic non-protein coding RNA 2505 Neighboring gene MPRA-validated peak5020 silencer Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr4:36642697-36643366 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21411 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15346 Neighboring gene MPRA-validated peak5022 silencer Neighboring gene MPRA-validated peak5023 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21412 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_78610 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_78652 Neighboring gene uncharacterized LOC101928721 Neighboring gene uncharacterized LOC105374402 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:37147574-37148074 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:37148075-37148575 Neighboring gene microRNA 4801

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_134669.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL136537
    Related
    ENST00000562049.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    37001779..37020706
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    36970245..36989163
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Chemical Information
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Research Materials