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LINC02882 long intergenic non-protein coding RNA 2882 [ Homo sapiens (human) ]

Gene ID: 100507377, updated on 17-Sep-2024

Summary

Official Symbol
LINC02882provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2882provided by HGNC
Primary source
HGNC:HGNC:54802
See related
Ensembl:ENSG00000251138 AllianceGenome:HGNC:54802
Gene type
ncRNA
RefSeq status
PREDICTED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC02882 in Genome Data Viewer
Location:
12q21.1
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (74133173..74292631, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (74110473..74266491, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (74526953..74686411, complement)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene U8 small nucleolar RNA Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr12:74163268-74164467 Neighboring gene long intergenic non-protein coding RNA 2445 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:74371981-74372553 Neighboring gene long intergenic non-protein coding RNA 2394 Neighboring gene MPRA-validated peak1834 silencer Neighboring gene SURP and G-patch domain containing 1 pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:74564879-74565379 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:74685765-74686413 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:74686414-74687061 Neighboring gene uncharacterized LOC107987178 Neighboring gene VENT homeobox pseudogene 3 Neighboring gene uncharacterized LOC124902967

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
Genome-wide association with bone mass and geometry in the Framingham Heart Study.
EBI GWAS Catalog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_038300.1 RNA Sequence

    Status: PREDICTED

    Source sequence(s)
    BC061638
    Related
    ENST00000549905.5

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    74133173..74292631 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    74110473..74266491 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)