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LOC100506929 uncharacterized LOC100506929 [ Homo sapiens (human) ]

Gene ID: 100506929, updated on 22-Oct-2024

Summary

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Gene symbol
LOC100506929
Gene description
uncharacterized LOC100506929
See related
Ensembl:ENSG00000230015
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 4.5) See more
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Genomic context

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See LOC100506929 in Genome Data Viewer
Location:
1q43
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (240739147..240743650, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (240150526..240155026, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (240902447..240906950, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene ferredoxin 2 pseudogene Neighboring gene uncharacterized LOC105373228 Neighboring gene Sharpr-MPRA regulatory region 3663 Neighboring gene THAP domain containing 12 pseudogene 8 Neighboring gene uncharacterized LOC124904602 Neighboring gene regulator of G protein signaling 7 Neighboring gene riboflavin kinase pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. GWAS of longevity in CHARGE consortium confirms APOE and FOXO3 candidacy. Broer L, et al. J Gerontol A Biol Sci Med Sci, 2015 Jan. PMID 25199915, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
GWAS of Longevity in CHARGE Consortium Confirms APOE and FOXO3 Candidacy.
EBI GWAS Catalog

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_188400.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL365184

  2. NR_188401.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL365184

  3. NR_188402.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL365184

  4. NR_188403.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL365184
    Related
    ENST00000817151.1

  5. NR_188404.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL365184

  6. NR_188405.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL365184

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    240739147..240743650 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    240150526..240155026 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials