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MAP3K2-DT MAP3K2 divergent transcript [ Homo sapiens (human) ]

Gene ID: 100506922, updated on 22-Oct-2024

Summary

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Official Symbol
MAP3K2-DTprovided by HGNC
Official Full Name
MAP3K2 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:54088
See related
Ensembl:ENSG00000236682 AllianceGenome:HGNC:54088
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See MAP3K2-DT in Genome Data Viewer
Location:
2q14.3
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (127387438..127400580)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (127822718..127835862)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (128145014..128158156)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene mitogen-activated protein kinase kinase kinase 2 Neighboring gene RNA, U6 small nuclear 1147, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:128109563-128110062 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr2:128111582-128112160 Neighboring gene uncharacterized LOC124906074 Neighboring gene MPRA-validated peak3853 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11931 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:128158054-128158766 Neighboring gene translation initiation factor IF-2-like Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11932 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16486 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16487 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:128172964-128173726 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16488 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:128180062-128180860 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:128180861-128181657 Neighboring gene microRNA 4783 Neighboring gene protein C, inactivator of coagulation factors Va and VIIIa

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Aberrant expression of long noncoding RNAs in cumulus cells isolated from PCOS patients. Huang X, et al. J Assist Reprod Genet, 2016 Jan. PMID 26650608, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_187125.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC068282

  2. NR_187126.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC068282
    Related
    ENST00000654207.4

  3. NR_187127.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC068282
    Related
    ENST00000433673.3

  4. NR_187128.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC068282
    Related
    ENST00000778721.1

  5. NR_187129.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC068282

  6. NR_187130.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC068282
    Related
    ENST00000778716.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    127387438..127400580
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    127822718..127835862
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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