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LOC100506236 uncharacterized LOC100506236 [ Homo sapiens (human) ]

Gene ID: 100506236, updated on 10-Dec-2024

Summary

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Gene symbol
LOC100506236
Gene description
uncharacterized LOC100506236
See related
Ensembl:ENSG00000286725
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 3.9) See more
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Genomic context

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See LOC100506236 in Genome Data Viewer
Location:
7p15.2
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (25831291..25833084, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (25966735..25968528, complement)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105375196 Neighboring gene VISTA enhancer hs1677 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr7:25560334-25561533 Neighboring gene MPRA-validated peak6444 silencer Neighboring gene long intergenic non-protein coding RNA 3007 Neighboring gene VISTA enhancer hs1600 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:25728911-25729412 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr7:25736154-25736771 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr7:25772342-25773008 Neighboring gene NANOG hESC enhancer GRCh37_chr7:25773276-25773786 Neighboring gene ubiquitin A-52 residue ribosomal protein fusion product 1 pseudogene 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:25783555-25784148 Neighboring gene VISTA enhancer hs1325 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr7:25869720-25870292 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18025 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25770 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18026 Neighboring gene VISTA enhancer hs1465 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25771 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25772 Neighboring gene uncharacterized LOC105375199 Neighboring gene uncharacterized LOC105375200 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25773 Neighboring gene microRNA 148a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

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Related articles in PubMed

  1. Meta-analysis identifies 13 new loci associated with waist-hip ratio and reveals sexual dimorphism in the genetic basis of fat distribution. Heid IM, et al. Nat Genet, 2010 Nov. PMID 20935629, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
Meta-analysis identifies 13 new loci associated with waist-hip ratio and reveals sexual dimorphism in the genetic basis of fat distribution.
EBI GWAS Catalog

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh38)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    25831291..25833084 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_108752.5 RNA Sequence

    Related
    ENST00000812383.1

  2. XR_927110.3 RNA Sequence

    Related
    ENST00000812388.1

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    25966735..25968528 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007078345.1 RNA Sequence

  2. XR_007078344.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases
Research Materials