U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LINC02036 long intergenic non-protein coding RNA 2036 [ Homo sapiens (human) ]

Gene ID: 100505920, updated on 22-Oct-2024

Summary

Go to the top of the page Help
Official Symbol
LINC02036provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2036provided by HGNC
Primary source
HGNC:HGNC:52876
See related
Ensembl:ENSG00000214145 AllianceGenome:HGNC:52876
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in thyroid (RPKM 5.6), testis (RPKM 0.8) and 1 other tissue See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LINC02036 in Genome Data Viewer
Location:
3q29
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (194203016..194250153, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (196899742..196946912, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (193920805..193967942, complement)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene RNA, 7SL, cytoplasmic 215, pseudogene Neighboring gene uncharacterized LOC107986172 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:193878773-193879704 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:193893180-193894093 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21017 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15018 Neighboring gene Sharpr-MPRA regulatory region 6697 Neighboring gene VISTA enhancer hs1543 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:193932031-193932834 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:193949267-193949768 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:193949769-193950268 Neighboring gene long intergenic non-protein coding RNA 2037 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15019 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:193988835-193989766 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr3:193994438-193995637 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:194000115-194000616 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:194000617-194001116 Neighboring gene long intergenic non-protein coding RNA 2048 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21018 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21019 Neighboring gene long intergenic non-protein coding RNA 887 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21020

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Initial assessment of human gene diversity and expression patterns based upon 83 million nucleotides of cDNA sequence. Adams MD, et al. Nature, 1995 Sep 28. PMID 7566098
  2. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548

GeneRIFs: Gene References Into Functions

Phenotypes

Go to the top of the page Help

Review eQTL and phenotype association data in this region using PheGenI

Variation

Go to the top of the page Help

See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

Go to the top of the page Help

Markers

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_125403.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AC117469
    Related
    ENST00000794668.1

  2. NR_125404.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' terminal exon, resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    AC117469

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    194203016..194250153 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    196899742..196946912 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials