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LOC100500442 uncharacterized LOC100500442 [ Glycine max (soybean) ]

Gene ID: 100500442, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100500442
Gene description
uncharacterized LOC100500442
Locus tag
GLYMA_02G153000v4
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100500442 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
1
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 2 NC_016089.4 (16148387..16149147, complement)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 2 NC_016089.3 (15723402..15724158, complement)

Chromosome 2 - NC_016089.4Genomic Context describing neighboring genes Neighboring gene protein TRANSPORT INHIBITOR RESPONSE 1A Neighboring gene zinc finger protein CONSTANS-LIKE 13 Neighboring gene glutaredoxin-C11 Neighboring gene uncharacterized LOC121173110

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Monothiol glutaredoxin-S9-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001251229.2 → NP_001238158.1  Monothiol glutaredoxin-S9-like

    See identical proteins and their annotated locations for NP_001238158.1

    Status: VALIDATED

    Source sequence(s)
    BG511716, BT091374, CA799146, FK009084
    UniProtKB/TrEMBL
    C6T1R8
    Conserved Domains (1) summary
    TIGR02189
    Location:4 → 100
    GlrX-like_plant; Glutaredoxin-like family

RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_016089.4 Reference Glycine_max_v4.0 Primary Assembly

    Range
    16148387..16149147 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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