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LIME1 Lck interacting transmembrane adaptor 1 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 100425312, updated on 8-Mar-2024

Summary

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Gene symbol
LIME1
Gene description
Lck interacting transmembrane adaptor 1
See related
Ensembl:ENSMMUG00000050212
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See LIME1 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
6
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 10 NC_041763.1 (98946102..98948579)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 10 NC_027902.1 (563316..566494, complement)

Chromosome 10 - NC_041763.1Genomic Context describing neighboring genes Neighboring gene ADP ribosylation factor related protein 1 Neighboring gene zinc finger CCCH-type and G-patch domain containing Neighboring gene LIM domain-containing protein A-like Neighboring gene SLC2A4 regulator Neighboring gene zinc finger and BTB domain containing 46 Neighboring gene uncharacterized LOC107000330

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein kinase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in B cell receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in T cell receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of MAP kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of canonical NF-kappaB signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of non-canonical NF-kappaB signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of release of sequestered calcium ion into cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of B cell receptor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lck-interacting transmembrane adapter 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041763.1 Reference Mmul_10 Primary Assembly

    Range
    98946102..98948579
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002798054.3 → XP_002798100.2  lck-interacting transmembrane adapter 1

    UniProtKB/TrEMBL
    A0A5F8APR6
    Conserved Domains (1) summary
    pfam15332
    Location:27 → 259
    LIME1; Lck-interacting transmembrane adapter 1

  2. XM_028828736.1 → XP_028684569.1  lck-interacting transmembrane adapter 1

    UniProtKB/TrEMBL
    A0A5F8APR6
    Related
    ENSMMUP00000079934.1, ENSMMUT00000104428.1
    Conserved Domains (1) summary
    pfam15332
    Location:27 → 259
    LIME1; Lck-interacting transmembrane adapter 1

RNA

  1. XR_001447393.2 RNA Sequence

  2. XR_001447392.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases
Research Materials