U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

MIR548U microRNA 548u [ Homo sapiens (human) ]

Gene ID: 100422884, updated on 10-Dec-2024

Summary

Official Symbol
MIR548Uprovided by HGNC
Official Full Name
microRNA 548uprovided by HGNC
Primary source
HGNC:HGNC:38316
See related
Ensembl:ENSG00000212017 miRBase:MI0014168; AllianceGenome:HGNC:38316
Gene type
ncRNA
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See MIR548U in Genome Data Viewer
Location:
6p11.2
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (57390132..57390212)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (57229171..57229251)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (57254930..57255010)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17304 Neighboring gene BAG cochaperone 2 Neighboring gene RAB23, member RAS oncogene family Neighboring gene DNA primase subunit 2 Neighboring gene long intergenic non-protein coding RNA 3001 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17305 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:57211753-57212253 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:57288076-57288610 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:57288611-57289144 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:57298773-57298947 Neighboring gene uncharacterized LOC105375103 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr6:58146291-58147490 Neighboring gene uncharacterized LOC105375102 Neighboring gene tRNA-Ala (anticodon AGC) 24-1 Neighboring gene tRNA-Ile (anticodon AAT) 1-1

Genomic regions, transcripts, and products

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_036097.1 RNA Sequence

    Status: PROVISIONAL

    Source sequence(s)
    AL121975
    Related
    ENST00000390728.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    57390132..57390212
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    57229171..57229251
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)