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LOC100420442 tripartite motif-containing 75 pseudogene [ Homo sapiens (human) ]

Gene ID: 100420442, updated on 17-Sep-2024

Summary

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Gene symbol
LOC100420442
Gene description
tripartite motif-containing 75 pseudogene
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See LOC100420442 in Genome Data Viewer
Location:
12q21.31
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (80860325..80861484, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (80839148..80840307, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (81254104..81255263, complement)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene MED14-independent group 3 enhancer GRCh37_chr12:81171500-81172699 Neighboring gene long intergenic non-protein coding RNA 1490 Neighboring gene lin-7 homolog A, crumbs cell polarity complex component Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr12:81240607-81241184 Neighboring gene microRNA 617 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4685 Neighboring gene microRNA 618 Neighboring gene NANOG hESC enhancer GRCh37_chr12:81480008-81480635 Neighboring gene uncharacterized LOC107984535 Neighboring gene NANOG hESC enhancer GRCh37_chr12:81489283-81489784 Neighboring gene acyl-CoA synthetase short chain family member 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_024034.1 

    Range
    101..1260
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    80860325..80861484 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    80839148..80840307 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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