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LOC100420011 transmembrane protein 38A pseudogene [ Homo sapiens (human) ]

Gene ID: 100420011, updated on 10-Dec-2024

Summary

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Gene symbol
LOC100420011
Gene description
transmembrane protein 38A pseudogene
See related
Ensembl:ENSG00000257752
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See LOC100420011 in Genome Data Viewer
Location:
12q21.32
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (88057800..88058576, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (88039677..88040453, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (88451577..88452353, complement)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124902977 Neighboring gene RNA 5'-phosphate and 3'-OH ligase 1 Neighboring gene RNA, 5S ribosomal pseudogene 364 Neighboring gene MPRA-validated peak1864 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6699 Neighboring gene centrosomal protein 290 Neighboring gene H3K27ac hESC enhancer GRCh37_chr12:88535951-88536454 Neighboring gene transmembrane O-mannosyltransferase targeting cadherins 3 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr12:88621606-88622152 Neighboring gene suppressyn-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Homology

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_024037.1 

    Range
    101..877
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    88057800..88058576 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    88039677..88040453 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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