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Poteh POTE ankyrin domain family member H [ Rattus norvegicus (Norway rat) ]

Gene ID: 100363368, updated on 9-Dec-2024

Summary

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Official Symbol
Potehprovided by RGD
Official Full Name
POTE ankyrin domain family member Hprovided by RGD
Primary source
RGD:2323175
See related
AllianceGenome:RGD:2323175
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Orthologous to human POTEH (POTE ankyrin domain family member H). [provided by Alliance of Genome Resources, Dec 2024]
Expression
Biased expression in Testes (RPKM 26.3), Lung (RPKM 13.8) and 9 other tissues See more
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Genomic context

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See Poteh in Genome Data Viewer
Location:
15p14
Exon count:
25
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 15 NC_086033.1 (19559450..19654345)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 15 NC_051350.1 (17131582..17219924)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 15 NC_005114.4 (18919299..19008178)

Chromosome 15 - NC_086033.1Genomic Context describing neighboring genes Neighboring gene filamin B Neighboring gene uncharacterized LOC134482086 Neighboring gene ribosomal protein S19, pseudogene 15 Neighboring gene UTP4 small subunit processome component, pseudogene 1 Neighboring gene replication factor C subunit 5, pseudogene 2 Neighboring gene ubiquitin-conjugating enzyme E2G 1 like 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
ankyrin repeat domain-containing protein 26-like; coiled-coil domain-containing protein 144A-like
Names
mCG11429-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086033.1 Reference GRCr8

    Range
    19559450..19654345
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008770604.4 → XP_008768826.1  ankyrin repeat domain-containing protein 26-like isoform X2

    See identical proteins and their annotated locations for XP_008768826.1

    Conserved Domains (6) summary
    cd00204
    Location:49 → 174
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam12001
    Location:939 → 1038
    DUF3496; Domain of unknown function (DUF3496)
    pfam12796
    Location:59 → 150
    Ank_2; Ankyrin repeats (3 copies)
    pfam13637
    Location:25 → 75
    Ank_4; Ankyrin repeats (many copies)
    pfam13857
    Location:140 → 179
    Ank_5; Ankyrin repeats (many copies)
    sd00045
    Location:54 → 85
    ANK; ANK repeat [structural motif]

  2. XM_006251787.5 → XP_006251849.1  ankyrin repeat domain-containing protein 26-like isoform X1

    See identical proteins and their annotated locations for XP_006251849.1

    Conserved Domains (6) summary
    cd00204
    Location:49 → 174
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam12001
    Location:939 → 1038
    DUF3496; Domain of unknown function (DUF3496)
    pfam12796
    Location:59 → 150
    Ank_2; Ankyrin repeats (3 copies)
    pfam13637
    Location:25 → 75
    Ank_4; Ankyrin repeats (many copies)
    pfam13857
    Location:140 → 179
    Ank_5; Ankyrin repeats (many copies)
    sd00045
    Location:54 → 85
    ANK; ANK repeat [structural motif]

  3. XM_008770605.4 → XP_008768827.1  ankyrin repeat domain-containing protein 26-like isoform X4

    See identical proteins and their annotated locations for XP_008768827.1

    Conserved Domains (6) summary
    cd00204
    Location:49 → 174
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam12001
    Location:875 → 974
    DUF3496; Domain of unknown function (DUF3496)
    pfam12796
    Location:59 → 150
    Ank_2; Ankyrin repeats (3 copies)
    pfam13637
    Location:25 → 75
    Ank_4; Ankyrin repeats (many copies)
    pfam13857
    Location:140 → 179
    Ank_5; Ankyrin repeats (many copies)
    sd00045
    Location:54 → 85
    ANK; ANK repeat [structural motif]

  4. XM_039093754.2 → XP_038949682.1  ankyrin repeat domain-containing protein 26-like isoform X3

    Conserved Domains (4) summary
    COG1196
    Location:706 → 964
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    sd00045
    Location:54 → 85
    ANK; ANK repeat [structural motif]
    pfam12001
    Location:885 → 984
    DUF3496; Domain of unknown function (DUF3496)
    pfam12796
    Location:25 → 118
    Ank_2; Ankyrin repeats (3 copies)

  5. XM_063274849.1 → XP_063130919.1  coiled-coil domain-containing protein 144A-like isoform X5

  6. XM_063274848.1 → XP_063130918.1  coiled-coil domain-containing protein 144A-like isoform X5

  7. XM_063274850.1 → XP_063130920.1  ankyrin repeat domain-containing protein 26-like isoform X6

RNA

  1. XR_010058107.1 RNA Sequence

  2. XR_010058106.1 RNA Sequence

  3. XR_010058108.1 RNA Sequence

  4. XR_010058105.1 RNA Sequence

  5. XR_005493877.2 RNA Sequence

  6. XR_001841483.3 RNA Sequence

  7. XR_005493880.2 RNA Sequence

  8. XR_005493879.2 RNA Sequence

  9. XR_005493882.2 RNA Sequence

  10. XR_005493884.2 RNA Sequence

  11. XR_005493886.2 RNA Sequence

  12. XR_005493881.2 RNA Sequence

  13. XR_005493883.2 RNA Sequence

  14. XR_005493885.2 RNA Sequence

Nucleotide Protein Strain
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