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C9h2orf72 similar to human chromosome 2 open reading frame 72 [ Rattus norvegicus (Norway rat) ]

Gene ID: 100362216, updated on 4-Jan-2025

Summary

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Official Symbol
C9h2orf72provided by RGD
Official Full Name
similar to human chromosome 2 open reading frame 72provided by RGD
Primary source
RGD:2318569
See related
EnsemblRapid:ENSRNOG00000017557 AllianceGenome:RGD:2318569
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Orthologous to human C2orf72 (chromosome 2 open reading frame 72). [provided by Alliance of Genome Resources, Jan 2025]
Expression
Biased expression in Liver (RPKM 207.8), Thymus (RPKM 23.6) and 2 other tissues See more
Orthologs
human mouse all
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Genomic context

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See C9h2orf72 in Genome Data Viewer
Location:
9q35
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 9 NC_086027.1 (94139808..94147919)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 9 NC_051344.1 (86691767..86699920)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 9 NC_005108.4 (93061835..93070449)

Chromosome 9 - NC_086027.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120094730 Neighboring gene signal recognition particle 14 like 1 Neighboring gene spermatogenesis associated 3 Neighboring gene uncharacterized LOC120094731 Neighboring gene uncharacterized LOC134480602 Neighboring gene proteasome 26S subunit, non-ATPase 1 Neighboring gene 5-hydroxytryptamine receptor 2B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
similar to human chromosome 2 open reading frame 72; uncharacterized protein C2orf72 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001433405.1 → NP_001420334.1  similar to human chromosome 2 open reading frame 72 isoform 1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000009
    UniProtKB/TrEMBL
    D4A6R4

  2. NM_001433406.1 → NP_001420335.1  similar to human chromosome 2 open reading frame 72 isoform 2

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000009

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086027.1 Reference GRCr8

    Range
    94139808..94147919
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006245499.4 → XP_006245561.1  uncharacterized protein C2orf72 homolog isoform X2

    Related
    ENSRNOP00000023592.3, ENSRNOT00000023592.5
    Conserved Domains (1) summary
    pfam15443
    Location:131 → 284
    DUF4630; Domain of unknown function (DUF4630)

  2. XM_002730053.7 → XP_002730099.1  uncharacterized protein C2orf72 homolog isoform X1

    Conserved Domains (1) summary
    pfam15443
    Location:131 → 285
    DUF4630; Domain of unknown function (DUF4630)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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