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si:ch211-166e11.5 si:ch211-166e11.5 [ Danio rerio (zebrafish) ]

Gene ID: 100334858, updated on 4-Jan-2025

Summary

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Official Symbol
si:ch211-166e11.5provided by ZNC
Official Full Name
si:ch211-166e11.5provided by ZNC
Primary source
ZFIN:ZDB-GENE-070912-142
See related
Ensembl:ENSDARG00000100407 AllianceGenome:ZFIN:ZDB-GENE-070912-142
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Orthologous to human SAMD3 (sterile alpha motif domain containing 3). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
all
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Genomic context

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See si:ch211-166e11.5 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 9 NC_007120.7 (298934..306237, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 9 NC_007120.6 (299120..306604, complement)

Chromosome 9 - NC_007120.7Genomic Context describing neighboring genes Neighboring gene poly(rC) binding protein 2 Neighboring gene kinesin family member 5A, a Neighboring gene SH3 and cysteine rich domain 3 Neighboring gene NDUFA4 mitochondrial complex associated like 2a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
sterile alpha motif domain-containing protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007120.7 Reference GRCz11 Primary Assembly

    Range
    298934..306237 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002663276.7 → XP_002663322.1  sterile alpha motif domain-containing protein 3

    UniProtKB/TrEMBL
    A0A0R4IB49, A0A8M1RR65
    Related
    ENSDARP00000130036.1, ENSDART00000166059.2
    Conserved Domains (1) summary
    cl02720
    Location:65 → 129
    PB1; The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials