U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

phf1 PHD finger protein 1 [ Danio rerio (zebrafish) ]

Gene ID: 100334345, updated on 9-Dec-2024

Summary

Official Symbol
phf1provided by ZNC
Official Full Name
PHD finger protein 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-100922-277
See related
AllianceGenome:ZFIN:ZDB-GENE-100922-277
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
si:ch73-119j17.3
Summary
Predicted to enable DNA binding activity; chromatin binding activity; and methylated histone binding activity. Predicted to be involved in negative regulation of gene expression, epigenetic. Predicted to be active in nucleus. Is expressed in telencephalon. Orthologous to human PHF1 (PHD finger protein 1). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See phf1 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 16 NC_007127.7 (45424922..45450761)
105 previous assembly GRCz10 (GCF_000002035.5) 16 NC_007127.6 (45458015..45477247)

Chromosome 16 - NC_007127.7Genomic Context describing neighboring genes Neighboring gene deoxyribonuclease II, lysosomal Neighboring gene ral guanine nucleotide dissociation stimulator-like 2 Neighboring gene synaptic Ras GTPase activating protein 1b Neighboring gene SMG5 nonsense mediated mRNA decay factor Neighboring gene progestin and adipoQ receptor family member VI

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General protein information

Preferred Names
PHD finger protein 1
Names
mtf2l2

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007127.7 Reference GRCz11 Primary Assembly

    Range
    45424922..45450761
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002665011.7XP_002665057.3  PHD finger protein 1

    UniProtKB/TrEMBL
    A0A8M1RE33
    Conserved Domains (3) summary
    smart00333
    Location:653
    TUDOR; Tudor domain
    pfam14061
    Location:474500
    Mtf2_C; Polycomb-like MTF2 factor 2
    cl22851
    Location:156207
    PHD_SF; PHD finger superfamily