cd4-2.2 CD4-2 molecule, tandem duplicate 2 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: cd4-2.2provided by ZNC
Official Full Name: CD4-2 molecule, tandem duplicate 2provided by ZNC
Primary source: ZFIN:ZDB-GENE-100922-127
See related: Ensembl:ENSDARG00000073950 AllianceGenome:ZFIN:ZDB-GENE-100922-127
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: CD4-2; CD4L-2; cd4-2.1; cd4rel1; cd4rel2; si:ch73-296e2.2
Summary: Predicted to be located in membrane. Is expressed in blood; gill; liver; muscle; and pleuroperitoneal region. [provided by Alliance of Genome Resources, Jan 2025]
Orthologs: all
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Genomic context

Location:: chromosome: 16

Exon count:: 10

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	16	NC_007127.7 (11960417..11963907, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	16	NC_007127.6 (12057069..12072262, complement)

Chromosome 16 - NC_007127.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Component	Evidence Code	Pubs
located_in membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: CD4-2 molecule, tandem duplicate 2

Names: hemicentin-2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001366060.1 → NP_001352989.1 CD4-2 molecule, tandem duplicate 2 precursor

Status: VALIDATED

Source sequence(s)

CU467865

Related

ENSDARP00000142514.2, ENSDART00000103971.4

Conserved Domains (3) summary

smart00409
Location:45 → 119

IG; Immunoglobulin

smart00410
Location:426 → 501

IG_like; Immunoglobulin like

cl28434
Location:133 → 204

I-set; Immunoglobulin I-set domain