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rnf31 ring finger protein 31 [ Danio rerio (zebrafish) ]

Gene ID: 100334178, updated on 4-Jan-2025

Summary

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Official Symbol
rnf31provided by ZNC
Official Full Name
ring finger protein 31provided by ZNC
Primary source
ZFIN:ZDB-GENE-170316-1
See related
Ensembl:ENSDARG00000090770 AllianceGenome:ZFIN:ZDB-GENE-170316-1
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
hoip
Summary
Predicted to enable ubiquitin-protein transferase activity and zinc ion binding activity. Acts upstream of or within cilium assembly. Predicted to be part of LUBAC complex. [provided by Alliance of Genome Resources, Jan 2025]
Annotation information
Annotation category: partial on reference assembly
Orthologs
all
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Genomic context

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See rnf31 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
21
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 2 NC_007113.7 (27812498..27854768, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 2 NC_007113.6 (28156862..28199156, complement)

Chromosome 2 - NC_007113.7Genomic Context describing neighboring genes Neighboring gene transmembrane protein 68 Neighboring gene XK related 4 Neighboring gene E3 ubiquitin-protein ligase RNF31-like Neighboring gene ring finger protein 152 Neighboring gene bucky ball

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. LUBAC regulates ciliogenesis by promoting CP110 removal from the mother centriole. Shen XL, et al. J Cell Biol, 2022 Jan 3. PMID 34813648, Free PMC Article
  2. Multiplicity of Buc copies in Atlantic salmon contrasts with loss of the germ cell determinant in primates, rodents and axolotl. Škugor A, et al. BMC Evol Biol, 2016 Oct 26. PMID 27784263, Free PMC Article
  3. Pharmacological modulation of melanocortin-4 receptor by melanocortin receptor accessory protein 2 in Nile tilapia. Wang M, et al. Gen Comp Endocrinol, 2019 Oct 1. PMID 31299224
  4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables transferase activity IEA
Inferred from Electronic Annotation
more info
  
enables ubiquitin-protein transferase activity IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within cilium assembly IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
part_of LUBAC complex IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
E3 ubiquitin-protein ligase RNF31

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007113.7 Reference GRCz11 Primary Assembly

    Range
    27812498..27854768 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009298565.4 → XP_009296840.2  E3 ubiquitin-protein ligase RNF31

    UniProtKB/TrEMBL
    A0A8M3B0A7
    Related
    ENSDARP00000109107.2, ENSDART00000121623.3
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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