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si:ch73-22a13.3 si:ch73-22a13.3 [ Danio rerio (zebrafish) ]

Gene ID: 100333120, updated on 4-Jan-2025

Summary

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Official Symbol
si:ch73-22a13.3provided by ZNC
Official Full Name
si:ch73-22a13.3provided by ZNC
Primary source
ZFIN:ZDB-GENE-141216-64
See related
Ensembl:ENSDARG00000053488 AllianceGenome:ZFIN:ZDB-GENE-141216-64
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to enable kinase activity. Predicted to act upstream of or within inositol phosphate biosynthetic process and phosphorylation. [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
all
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Genomic context

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See si:ch73-22a13.3 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 14 NC_007125.7 (6182278..6193971)
105 previous assembly GRCz10 (GCF_000002035.5) 14 NC_007125.6 (5875496..5887137)

Chromosome 14 - NC_007125.7Genomic Context describing neighboring genes Neighboring gene potassium channel tetramerization domain containing 8 Neighboring gene BSCL2 lipid droplet biogenesis associated, seipin, like Neighboring gene highly divergent homeobox Neighboring gene SMU1 DNA replication regulator and spliceosomal factor a Neighboring gene elongator acetyltransferase complex subunit 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables kinase activity IEA
Inferred from Electronic Annotation
more info
  
enables transferase activity IEA
Inferred from Electronic Annotation
more info
  
enables transferase activity, transferring phosphorus-containing groups IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within inositol phosphate biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within phosphorylation IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
inositol-trisphosphate 3-kinase A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007125.7 Reference GRCz11 Primary Assembly

    Range
    6182278..6193971
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009307699.4 → XP_009305974.1  inositol-trisphosphate 3-kinase A isoform X2

    UniProtKB/TrEMBL
    A0A8M3B8D9, F1QPV9
    Related
    ENSDARP00000070007.4, ENSDART00000075525.5
    Conserved Domains (1) summary
    pfam03770
    Location:370 → 581
    IPK; Inositol polyphosphate kinase

  2. XM_021481093.2 → XP_021336768.1  inositol-trisphosphate 3-kinase A isoform X1

    UniProtKB/TrEMBL
    A0A8M9QBA1
    Conserved Domains (1) summary
    pfam03770
    Location:376 → 587
    IPK; Inositol polyphosphate kinase
Nucleotide Protein
Heading Accession and Version

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